<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html> <head> <title>UTas ePrints - Application of elliptical Fourier analysis of otolith form as a tool for stock identification</title> <script type="text/javascript" src="http://eprints.utas.edu.au/javascript/auto.js"><!-- padder --></script> <style type="text/css" media="screen">@import url(http://eprints.utas.edu.au/style/auto.css);</style> <style type="text/css" media="print">@import url(http://eprints.utas.edu.au/style/print.css);</style> <link rel="icon" href="/images/eprints/favicon.ico" type="image/x-icon" /> <link rel="shortcut icon" href="/images/eprints/favicon.ico" type="image/x-icon" /> <link rel="Top" href="http://eprints.utas.edu.au/" /> <link rel="Search" href="http://eprints.utas.edu.au/cgi/search" /> <meta content="Tracey, Sean R." name="eprints.creators_name" /> <meta content="Lyle, Jeremy M." name="eprints.creators_name" /> <meta content="" name="eprints.creators_id" /> <meta content="Jeremy.Lyle@utas.edu.au" name="eprints.creators_id" /> <meta content="article" name="eprints.type" /> <meta content="2007-11-23 02:51:41" name="eprints.datestamp" /> <meta content="2008-01-08 15:30:00" name="eprints.lastmod" /> <meta content="show" name="eprints.metadata_visibility" /> <meta content="Application of elliptical Fourier analysis of otolith form as a tool for stock identification" name="eprints.title" /> <meta content="pub" name="eprints.ispublished" /> <meta content="300700" name="eprints.subjects" /> <meta content="300000" name="eprints.subjects" /> <meta content="300703" name="eprints.subjects" /> <meta content="restricted" name="eprints.full_text_status" /> <meta content="Latris lineata; Stock structure; Elliptical Fourier Function; Constrained ordination methods; Age; Growth" name="eprints.keywords" /> <meta content=""The definitive version is available at www.blackwell-synergy.com" " name="eprints.note" /> <meta content=" Geometric morphometrics is a relatively new tool to fisheries research showing promise as a means of enabling researchers to cheaply and quickly categorise fish to individual stocks based on variations in otolith form, most commonly size and shape. In this study we introduce the method of elliptical Fourier analysis using two widely separated populations of striped trumpeter (Latris lineata) as a case study and compare the interpretation of results based on both unconstrained and constrained ordination techniques. There were no significant differences in otolith morphometrics between sex or age classes within each region. All form descriptors were standardised for fish length, thereby minimising confounding effects on any potential inter-regional otolith form differences. Non-metric multidimensional scaling was not sufficient to elucidate differences in otolith form between populations. However, using constrained canonical analysis of principal coordinates and canonical discriminant analysis, regional differences became evident with allocation success of 75 and 87%, respectively. Based on this study differences in otolith form reflect that the two tested striped trumpeter populations have reasonable phenotypic anonymity. This study further supports the usefulness of shape analysis and constrained non-parametric statistical tests as tools for stock discrimination and introduces elliptical Fourier analysis to the study of otolith morphometrics." name="eprints.abstract" /> <meta content="2006" name="eprints.date" /> <meta content="published" name="eprints.date_type" /> <meta content="Fisheries Research" name="eprints.publication" /> <meta content="77" name="eprints.volume" /> <meta content="2" name="eprints.number" /> <meta content="138-147" name="eprints.pagerange" /> <meta content="10.1016/j.fishres.2005.10.013" name="eprints.id_number" /> <meta content="TRUE" name="eprints.refereed" /> <meta content="0165-7836" name="eprints.issn" /> <meta content="http://dx.doi.org/10.1016/j.fishres.2005.10.013" name="eprints.official_url" /> <meta content="Adams, D.C., Rohlf, F.J., Slice, D.E., 2004. Geometric morphometrics: ten years of progress following the ‘revolution’. Ital. J. Zool. 71, 5–16. Anderson, M.J., 2001. A new method for non-parametric multivariate analysis of variance. Aust. Ecol. 26, 32–46. Anderson, M.J., Willis, T.J., 2003. Canonical analysis of principal coordinates: a useful method of constrained ordination for ecology. Ecology 84, 511–525. Anderson, M.J., 2004. PERMANOVA 2 Factor: A Fortran computer program for permutational multivariate analysis of variance (for any two-factor ANOVA design) using permutation tests. Department of Statistics, University of Auckland, New Zealand. Accessed via: http://www.stat.auckland.ac.nz/∼mja/. Andrew, T.G., Hecht, T., Heemstra, P.C., Lutjeharms, J.R.E., 1995. Fishes of the Tristan Da Cunha group and Gough Island, South Atlantic Ocean. Ichthyol. Bull. 63, 1–41. Beamish, R.J., Fournier, D.A., 1981. A method for comparing the precision of a set of age determinations. Can. J. Fish. Aquat. Sci. 38, 982–983. Begg, G.A., Waldman, J.R., 1999. An holistic approach to fish stock identification. Fish. Res. 43, 35–44. Begg, G.A., Friedland, K.D., Pearce, J.B., 1999. Stock identification and its role in stock assessment and fisheries management: an overview. Fish. Res. 43, 1–8. Bird, J.L., Eppler, D.T., Checkley Jr., D.M., 1986. Comparisons of herring otoliths using Fourier series shape analysis. Can. J. Fish. Aquat. Sci. 43, 1228–1234. Bolles, K., Begg, G.A., 2000. Distinction between silver hake (Merluccius bilinearis) stocks in U.S. waters of the Northwest Atlantic based on whole otolith morphometrics. Fish. Bull. 98, 451–462. Booke, H.E., 1981. The conundrum of the stock concept — are nature and nurture definable in fishery science? Can. J. Fish. Aquat. Sci. 38, 1479–1480. Cadrin, S.X., Friedland, K.D., 1999. The utility of image processing techniques for morphometric analysis and stock identification. Fish. Res. 43, 129–139. Campana, S.E., Casselman, J.M., 1993. Stock discrimination using otolith shape analysis. Can. J. Fish. Aquat. Sci. 50, 1062–1083. Cardinale, M.P., Doering-Arjes, P., Kastowsky, M., Mosegaard, H., 2004. Effects of sex, stock, and environment on the shape of known-age Atlantic cod (Gadus morhua) otoliths. Can. J. Fish. Aquat. Sci. 61, 158–167. Castonguay, M., Simard, P., Gagnon, P., 1991. Usefulness of Fourier analysis of otolith shape for Atlantic mackerel (Scomber scombrus) stock discrimination. Can. J. Fish. Aquat. Sci. 48, 296–302. Cerrato, R.M., 1990. Interpretable statistical tests for growth comparisons using parameters in the von Bertalanffy equation. Can. J. Fish. Aquat. Sci. 47, 1416–1426. Chen, S.Y.Y., Lestrel, P.E., Kerr, W.J.S., McColl, J.H., 2000. Describing shape changes in the human mandible using elliptical Fourier functions. Eur. J. Orthodont. 22, 205–216. Duhamel, G., 1989. Ichtyofaune des ˆıles Saint-paul ´et Amsterdam (Oc´ean Indien sud). M´esog´ee 49, 21–47. Francis, R.I.C.C., 1988. Are growth parameters from tagging and agelength data comparable? Can. J. Fish. Aquat. Sci. 45, 936–942. Freeman, H., 1974. Computer processing of line drawing images. Comput. Surv. 6, 57–97. Ihssen, P.E., Booke, H.E., Casselman, J.M., McGlade, J.M., Payne, N.R., Utter, F.M., 1981. Stock identification: material and methods. Can. J. Fish. Aquat. Sci. 38, 1838–1855. Iwata, H., Ukai, Y., 2002. SHAPE: a computer program package for quantitative evaluation of biological shapes based on elliptic Fourier descriptors. J. Hered. 93, 384–385. Kimura, D.K., 1980. Likelihood methods for the von Bertalanffy growth curve. Fish. Bull. 77, 765–776. Kingsford, M.J., Schiel, D.R., Battershill, C.N., 1989. Distribution and abundance of fish in a rocky reef environment at the subantarctic Auckland Islands. New Zeal. Pol. Biol. 9, 179–186. Kuhl, F.P., Giardina, C.R., 1982. Elliptic Fourier features of a closed contour. Comput. Graph. Image Process. 18, 236–258. Lachenbruch, P.A., Mickey, M.R., 1968. Estimation of error rates in discriminant analysis. Technometrics 10, 1–11. Last, P.R., Scott, E.O.G., Talbot, F.H., 1983. Fishes of Tasmania. Tasmanian Fisheries Development Authority, p. 563. Lestrel, P.E. (Ed.), 1997. Fourier Descriptors and their Application in Biology. Cambridge University Press, UK, p. 466. Lou, D.C., Mapstone, B.D., Russ, G.R., Davies, C.R., Begg, G.A., 2005. Using otolith weight-age relationships to predict age based metrics of coral reef fish populations of different spatial scales. Fish. Res. 71, 279–294. Lyle, J., Murphy, R., 2002. Long distance migration of striped trumpeter. Fishing Today 14 (6), 16. Messieh, S.N., 1975. Growth of otoliths in young herring in the Bay of Fundy. Trans. Am. Fish. Soc. 104, 770–774. Roberts, C.D., 2003. A new species of trumpeter (Teleostei: Percomorpha; Latridae) from the central South Pacific Ocean, with a taxonomic review of the striped trumpeter Latris lineata. J. Roy. Soc. New Zeal. 33, 731–754. Rohlf, F.J., 1998. On applications of geometric morphometrics to studies on ontogeny and phylogeny. Syst. Biol. 47, 147–158. Torres, G.J., Lombarte, A., Morales-Nin, B., 2000. Sagittal otolith size and shape variability to identify geographical intraspecific differences in three species of the genus Merluccius. J. Mar. Biol. Assoc. U.K. 80, 333–342. Tracey, S.R., Lyle, J.M., 2005. Age validation, growth modelling and mortality estimates of striped trumpeter (Latris lineata) from southeastern Australia: making the most of patchy data. Fish. Bull. 103, 169–182. Willis, T.J., Anderson, M.J., 2003. Structure of cryptic reef fish assemblages: relationships with habitat characteristics and predator density. Mar. Ecol. Prog. Ser. 257, 209–221." name="eprints.referencetext" /> <meta content="Tracey, Sean R. and Lyle, Jeremy M. (2006) Application of elliptical Fourier analysis of otolith form as a tool for stock identification. Fisheries Research, 77 (2). pp. 138-147. ISSN 0165-7836" name="eprints.citation" /> <meta content="http://eprints.utas.edu.au/2524/1/Tracey_et_al_2006.pdf" name="eprints.document_url" /> <link rel="schema.DC" href="http://purl.org/DC/elements/1.0/" /> <meta content="Application of elliptical Fourier analysis of otolith form as a tool for stock identification" name="DC.title" /> <meta content="Tracey, Sean R." name="DC.creator" /> <meta content="Lyle, Jeremy M." name="DC.creator" /> <meta content="300700 Fisheries Sciences" name="DC.subject" /> <meta content="300000 Agricultural, Veterinary and Environmental Sciences" name="DC.subject" /> <meta content="300703 Aquaculture" name="DC.subject" /> <meta content=" Geometric morphometrics is a relatively new tool to fisheries research showing promise as a means of enabling researchers to cheaply and quickly categorise fish to individual stocks based on variations in otolith form, most commonly size and shape. In this study we introduce the method of elliptical Fourier analysis using two widely separated populations of striped trumpeter (Latris lineata) as a case study and compare the interpretation of results based on both unconstrained and constrained ordination techniques. There were no significant differences in otolith morphometrics between sex or age classes within each region. All form descriptors were standardised for fish length, thereby minimising confounding effects on any potential inter-regional otolith form differences. Non-metric multidimensional scaling was not sufficient to elucidate differences in otolith form between populations. However, using constrained canonical analysis of principal coordinates and canonical discriminant analysis, regional differences became evident with allocation success of 75 and 87%, respectively. Based on this study differences in otolith form reflect that the two tested striped trumpeter populations have reasonable phenotypic anonymity. This study further supports the usefulness of shape analysis and constrained non-parametric statistical tests as tools for stock discrimination and introduces elliptical Fourier analysis to the study of otolith morphometrics." name="DC.description" /> <meta content="2006" name="DC.date" /> <meta content="Article" name="DC.type" /> <meta content="PeerReviewed" name="DC.type" /> <meta content="application/pdf" name="DC.format" /> <meta content="http://eprints.utas.edu.au/2524/1/Tracey_et_al_2006.pdf" name="DC.identifier" /> <meta content="http://dx.doi.org/10.1016/j.fishres.2005.10.013" name="DC.relation" /> <meta content="Tracey, Sean R. and Lyle, Jeremy M. (2006) Application of elliptical Fourier analysis of otolith form as a tool for stock identification. Fisheries Research, 77 (2). pp. 138-147. 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identification</h1> <p style="margin-bottom: 1em" class="not_ep_block"><span class="person_name">Tracey, Sean R.</span> and <span class="person_name">Lyle, Jeremy M.</span> (2006) <xhtml:em>Application of elliptical Fourier analysis of otolith form as a tool for stock identification.</xhtml:em> Fisheries Research, 77 (2). pp. 138-147. ISSN 0165-7836</p><p style="margin-bottom: 1em" class="not_ep_block"></p><table style="margin-bottom: 1em" class="not_ep_block"><tr><td valign="top" style="text-align:center"><a href="http://eprints.utas.edu.au/2524/1/Tracey_et_al_2006.pdf"><img alt="[img]" src="http://eprints.utas.edu.au/style/images/fileicons/application_pdf.png" class="ep_doc_icon" border="0" /></a></td><td valign="top"><a href="http://eprints.utas.edu.au/2524/1/Tracey_et_al_2006.pdf"><span class="ep_document_citation">PDF</span></a> - Full text restricted - Requires a PDF viewer<br />334Kb</td><td><form method="get" accept-charset="utf-8" action="http://eprints.utas.edu.au/cgi/request_doc"><input accept-charset="utf-8" value="3325" name="docid" type="hidden" /><div class=""><input value="Request a copy" name="_action_null" class="ep_form_action_button" onclick="return EPJS_button_pushed( '_action_null' )" type="submit" /> </div></form></td></tr></table><p style="margin-bottom: 1em" class="not_ep_block">Official URL: <a href="http://dx.doi.org/10.1016/j.fishres.2005.10.013">http://dx.doi.org/10.1016/j.fishres.2005.10.013</a></p><div class="not_ep_block"><h2>Abstract</h2><p style="padding-bottom: 16px; text-align: left; margin: 1em auto 0em auto"> Geometric morphometrics is a relatively new tool to fisheries research showing promise as a means of enabling researchers to cheaply and quickly categorise fish to individual stocks based on variations in otolith form, most commonly size and shape. In this study we introduce the method of elliptical Fourier analysis using two widely separated populations of striped trumpeter (Latris lineata) as a case study and compare the interpretation of results based on both unconstrained and constrained ordination techniques. There were no significant differences in otolith morphometrics between sex or age classes within each region. All form descriptors were standardised for fish length, thereby minimising confounding effects on any potential inter-regional otolith form differences. Non-metric multidimensional scaling was not sufficient to elucidate differences in otolith form between populations. However, using constrained canonical analysis of principal coordinates and canonical discriminant analysis, regional differences became evident with allocation success of 75 and 87%, respectively. Based on this study differences in otolith form reflect that the two tested striped trumpeter populations have reasonable phenotypic anonymity. This study further supports the usefulness of shape analysis and constrained non-parametric statistical tests as tools for stock discrimination and introduces elliptical Fourier analysis to the study of otolith morphometrics.</p></div><table style="margin-bottom: 1em" cellpadding="3" class="not_ep_block" border="0"><tr><th valign="top" class="ep_row">Item Type:</th><td valign="top" class="ep_row">Article</td></tr><tr><th valign="top" class="ep_row">Additional Information:</th><td valign="top" class="ep_row">"The definitive version is available at www.blackwell-synergy.com" </td></tr><tr><th valign="top" class="ep_row">Keywords:</th><td valign="top" class="ep_row">Latris lineata; Stock structure; Elliptical Fourier Function; Constrained ordination methods; Age; Growth</td></tr><tr><th valign="top" class="ep_row">Subjects:</th><td valign="top" class="ep_row"><a href="http://eprints.utas.edu.au/view/subjects/300700.html">300000 Agricultural, Veterinary and Environmental Sciences > 300700 Fisheries Sciences</a><br /><a href="http://eprints.utas.edu.au/view/subjects/300000.html">300000 Agricultural, Veterinary and Environmental Sciences</a><br /><a href="http://eprints.utas.edu.au/view/subjects/300703.html">300000 Agricultural, Veterinary and Environmental Sciences > 300700 Fisheries Sciences > 300703 Aquaculture</a></td></tr><tr><th valign="top" class="ep_row">ID Code:</th><td valign="top" class="ep_row">2524</td></tr><tr><th valign="top" class="ep_row">Deposited By:</th><td valign="top" class="ep_row"><span class="ep_name_citation"><span class="person_name">Scholarly Publications Librarian</span></span></td></tr><tr><th valign="top" class="ep_row">Deposited On:</th><td valign="top" class="ep_row">23 Nov 2007 13:51</td></tr><tr><th valign="top" class="ep_row">Last Modified:</th><td valign="top" class="ep_row">09 Jan 2008 02:30</td></tr><tr><th valign="top" class="ep_row">ePrint Statistics:</th><td valign="top" class="ep_row"><a target="ePrintStats" href="/es/index.php?action=show_detail_eprint;id=2524;">View statistics for this ePrint</a></td></tr></table><p align="right">Repository Staff Only: <a href="http://eprints.utas.edu.au/cgi/users/home?screen=EPrint::View&eprintid=2524">item control page</a></p> </td></tr></table> </div> <!-- InstanceEndEditable --></td> </tr> <tr> <td><!-- #BeginLibraryItem "/Library/footer_eprints.lbi" --> <table width="795" border="0" align="left" cellpadding="0" class="footer"> <tr valign="top"> <td colspan="2"><div align="center"><a href="http://www.utas.edu.au">UTAS home</a> | <a href="http://www.utas.edu.au/library/">Library home</a> | <a href="/">ePrints home</a> | <a href="/contact.html">contact</a> | <a href="/information.html">about</a> | <a href="/view/">browse</a> | <a href="/perl/search/simple">search</a> | <a href="/perl/register">register</a> | <a href="/perl/users/home">user area</a> | <a href="/help/">help</a></div><br /></td> </tr> <tr><td colspan="2"><p><img src="/images/eprints/footerline.gif" width="100%" height="4" /></p></td></tr> <tr valign="top"> <td width="68%" class="footer">Authorised by the University Librarian<br /> © University of Tasmania ABN 30 764 374 782<br /> <a href="http://www.utas.edu.au/cricos/">CRICOS Provider Code 00586B</a> | <a href="http://www.utas.edu.au/copyright/copyright_disclaimers.html">Copyright & Disclaimers</a> | <a href="http://www.utas.edu.au/accessibility/index.html">Accessibility</a> | <a href="http://eprints.utas.edu.au/feedback/">Site Feedback</a> </td> <td width="32%"><div align="right"> <p align="right" class="NoPrint"><a href="http://www.utas.edu.au/"><img src="http://www.utas.edu.au/shared/logos/unioftasstrip.gif" alt="University of Tasmania Home Page" width="260" height="16" border="0" align="right" /></a></p> <p align="right" class="NoPrint"><a href="http://www.utas.edu.au/"><br /> </a></p> </div></td> </tr> <tr valign="top"> <td><p> </p></td> <td><div align="right"><span class="NoPrint"><a href="http://www.eprints.org/software/"><img src="/images/eprintslogo.gif" alt="ePrints logo" width="77" height="29" border="0" align="bottom" /></a></span></div></td> </tr> </table> <!-- #EndLibraryItem --> <div align="center"></div></td> </tr> </table> </body> </html>